La Jolla Crossroads – new apartments – they have 3 bdr or 3bdr + loft too. I think it’s also ~2000/mo. Near Valencia.There is also Villas of Rennaisance, but the rooms are smaller.
Edit:
There is also Trieste on Mahaila (or corner of Nobel & Regents). There are 2 other complexes on Regents called Regents something or other that have 3 bdr. Avanti, Vista La Jolla, University Town Square on Nobel,are newer 3 story townhomes that somethimes are for renting. Also, Southpointe, a few of the Cambridge (on Villa La Jolla). EastBluff, Marbella, Playmor, Andria all have 3 bdr.